Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2024-06-27 21:08:36,458 [622] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2024-06-27 21:08:36,586 [622] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2024-06-27 21:08:36,592 [622] INFO pulse.unloader: ------------------------------------------------------------------------
2024-06-27 21:08:36,592 [622] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2024-06-27 21:08:36,593 [622] INFO pulse.unloader: ------------------------------------------------------------------------
2024-06-27 21:08:36,622 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:08:36,623 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:08:36,623 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:08:36,624 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:08:36,793 [622] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2024-06-27 21:08:37,602 [622] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2024-06-27 21:08:37,618 [622] INFO pulse.unloader:
Do an intial solve
2024-06-27 21:08:37,705 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:08:37,706 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:08:37,706 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:08:37,707 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:08:37,707 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:08:38,205 [622] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-06-27 21:08:38,279 [622] DEBUG UFL_LEGACY: Blocks of each mode:
2024-06-27 21:08:38,484 [622] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-06-27 21:09:16,614 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:09:16,615 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:09:16,615 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:09:16,616 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:09:16,616 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:09:16,794 [622] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-06-27 21:09:16,868 [622] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-06-27 21:09:17,055 [622] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-06-27 21:09:20,503 [622] INFO pulse.unloader:
Iteration: 0
2024-06-27 21:09:24,048 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-06-27 21:09:24,091 [622] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-06-27 21:09:28,259 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:09:28,263 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-06-27 21:09:28,307 [622] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-06-27 21:09:28,704 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:09:28,747 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:09:28,748 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:09:28,790 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:09:28,791 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:09:28,828 [622] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2024-06-27 21:09:28,980 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:09:28,981 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:09:28,982 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:09:28,982 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:09:28,983 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:09:29,277 [622] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-06-27 21:09:29,350 [622] DEBUG UFL_LEGACY: Blocks of each mode:
2024-06-27 21:09:29,555 [622] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-06-27 21:10:08,012 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:10:08,013 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:10:08,014 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:10:08,014 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:10:08,015 [622] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 21:10:08,154 [622] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-06-27 21:10:08,230 [622] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-06-27 21:10:08,419 [622] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-06-27 21:10:11,933 [622] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2024-06-27 21:10:12,105 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,107 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,149 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,150 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,192 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,193 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,231 [622] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2024-06-27 21:10:12,243 [622] INFO pulse.unloader:
Residual: 0.011328623428538017
2024-06-27 21:10:12,244 [622] INFO pulse.unloader:
Iteration: 1
2024-06-27 21:10:12,415 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,417 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,459 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,460 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,502 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,503 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:12,541 [622] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2024-06-27 21:10:15,552 [622] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2024-06-27 21:10:15,722 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:15,724 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:15,766 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:15,767 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:15,809 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:15,810 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:15,848 [622] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2024-06-27 21:10:15,859 [622] INFO pulse.unloader:
Residual: 0.001698010214540199
2024-06-27 21:10:15,860 [622] INFO pulse.unloader:
Iteration: 2
2024-06-27 21:10:16,031 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:16,032 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:16,073 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:16,074 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:16,115 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:16,117 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:16,154 [622] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2024-06-27 21:10:19,191 [622] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2024-06-27 21:10:19,364 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,365 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,407 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,408 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,451 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,452 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,490 [622] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2024-06-27 21:10:19,502 [622] INFO pulse.unloader:
Residual: 0.0002592876931300245
2024-06-27 21:10:19,502 [622] INFO pulse.unloader:
Iteration: 3
2024-06-27 21:10:19,674 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,675 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,718 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,719 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,761 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,762 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:19,800 [622] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2024-06-27 21:10:22,804 [622] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2024-06-27 21:10:22,975 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:22,976 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:23,018 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:23,019 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:23,061 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:23,062 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:23,099 [622] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2024-06-27 21:10:23,110 [622] INFO pulse.unloader:
Residual: 3.931304295917144e-05
2024-06-27 21:10:23,111 [622] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2024-06-27 21:10:23,290 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:23,292 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:23,334 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:23,336 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:23,376 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 21:10:23,377 [622] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()